PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000910.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 854aa    MW: 98124.3 Da    PI: 7.1157
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000910.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR185.48.9e-2780187291
                     FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..................tekerrtraetrtgCkaklkvk 69 
                              fY+eYAk++GFsv +++s++s+ +g++++++fvC+++g++++++ +                  +++ r++++ ++t+Cka+l+vk
  Itr_sc000910.1_g00003.1  80 FYKEYAKSIGFSVIIKASRRSRISGKFIDAKFVCTRYGSKQKSSVSetpeavanidgtnnipikKKRGRKNQSLSKTDCKACLHVK 165
                              9****************************************999889****************99999****************** PP

                     FAR1  70 kekdgkwevtkleleHnHelap 91 
                              + +dg w+++++ +eHnHe++p
  Itr_sc000910.1_g00003.1 166 RGSDGMWVIHTFIKEHNHEIVP 187
                              *******************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.0E-2580187IPR004330FAR1 DNA binding domain
PfamPF105511.2E-30303395IPR018289MULE transposase domain
PROSITE profilePS5096610.447582618IPR007527Zinc finger, SWIM-type
PfamPF044344.2E-8584617IPR007527Zinc finger, SWIM-type
SMARTSM005751.4E-8593620IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 854 aa     Download sequence    Send to blast
MGIDLERPSE ELHRDKGNEV CCTEEAAASA AMTVQHDQEN FRPKDTHLVS DGDRVPLSHH  60
KFLEPHDGME FESKEDAFLF YKEYAKSIGF SVIIKASRRS RISGKFIDAK FVCTRYGSKQ  120
KSSVSETPEA VANIDGTNNI PIKKKRGRKN QSLSKTDCKA CLHVKRGSDG MWVIHTFIKE  180
HNHEIVPVQS YNVQGHRNLD QGHNNADAMH AVRDRTKKMC ASMHRQSGVA KKLENNGSTN  240
VGAQNLALDE RDAESMLEYF LHMQDDNPNF FYALDLNQEQ CLRNAFWIDA KARLDYHHFC  300
DAVFFDTAYI KNEYKLPLVT FIGVNHHFQL LLFGCALIAD ESKSTFVWLM RAWLRAMGGQ  360
APKVILTDED TALKEAVAEV FPDSRHCFCL WHVLSKIPEK LGSVIRRCEK FSTKFNKCIL  420
KSVTDEQFQK RWLKIVDRFD LRNDLWIQSL YEDRLRWVPV YMNSIFLAGI STMQRLESVI  480
SVLDKCMQRK TTLKEFLDQY KNILQEMGED EAKADFETWH RKPGLKSPSP FGKQMAALYT  540
HAIFKKFQIE VLGVVACHPK RESGNGETAT FRVQDFEENQ DFIVFWNEKT SDTSCSCRLF  600
EYKGILCRHI MIVLQMAGVY NIPSKYILKR WTKDAKSRET VRLVDSVESR VQRYTDICQR  660
VFKLGDEGSL SQESYNLAFI ALEKALRKCE RVNSSIQYEV ELCSPSNQDL NNFEEATQSN  720
CAQQTNEKNE SRRDKVQMEQ EGLAISIHDS WQQMGQLNSR VATLDAYFSS HQVVPGVGQM  780
NTISSIYSNQ PGIQELGQLN TTAPVDNGPY LTQPRLHGLT QLHFRPQSLQ NYFEMPESLQ  840
DLHEYNGDAL PDIR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010649043.10.0PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like isoform X4
TrEMBLF6HF670.0F6HF67_VITVI; Putative uncharacterized protein
STRINGVIT_01s0011g01470.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49621103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.10.0FAR1 family protein